secondbrain-mcp
Enables Claude clients to search, read, and write to a Markdown second brain vault via GitHub, with tools for retrieval, capture, and knowledge graph consistency.
README
secondbrain-mcp
One server. One connector. Every Claude client.
There is no chat UI to build. A custom connector is configured once, on your account, at claude.ai → Customize → Connectors → "+" → Add custom connector. From then on it is available in Claude Desktop, claude.ai, Cowork and the iOS and Android apps. Same server, same vault, same tools everywhere.
Claude connects to this remote MCP server from Anthropic's cloud, so the
server must be on the public internet with real TLS. Deploy target:
https://brain.lous.info on the shared Hetzner host. Platform services are
owned by hetzner-infra; this repo deploys only the app plus nginx /
observability drop-ins (same pattern as Padel Vibe / Unseen Servant).
Routes
| route | who calls it | auth |
|---|---|---|
/mcp |
Claude, every client | GitHub OAuth (allow-listed login) |
/authorize, /token, /auth/*, /.well-known/* |
Claude OAuth handshake | public endpoints of the OAuth proxy |
/ |
optional browser view | optional nginx basic auth |
/refresh |
GitHub webhook (optional) | X-Webhook-Secret |
/health |
Docker / CI healthcheck | none |
Auth
| Env | Role |
|---|---|
GITHUB_OAUTH_CLIENT_ID / GITHUB_OAUTH_CLIENT_SECRET |
GitHub OAuth App for the Claude connector |
GITHUB_ALLOWED_USERS |
Comma-separated GitHub logins (e.g. TomLous) — everyone else is rejected |
VAULT_GITHUB_PAT |
Fine-scoped PAT for HTTPS clone/pull/push of the vault (separate from OAuth) |
In Claude: add connector URL https://brain.lous.info/mcp, leave OAuth Client ID/Secret empty (Dynamic Client Registration), then Connect and sign in with GitHub as an allow-listed user.
How it works
phone browser ─┐ ┌─ shared nginx :443 ─┐
├── https ───────────┤ ├── secondbrain-mcp:8000
Claude cloud ──┘ └─────────────────────┘ │
├─ /vault (git clone)
│ ▲
│ │ pull every 5 min
github.com/.../SecondBrain
▲
Obsidian Git │ auto-commit
laptop
The container never touches your laptop. GitHub is the sync bus.
Deploy (Hetzner)
# one-time on the server
sudo mkdir -p /opt/secondbrain/deploy/nginx
sudo chown -R deploy:deploy /opt/secondbrain
cp .env.example /opt/secondbrain/deploy/.env # fill secrets
chmod 600 /opt/secondbrain/deploy/.env
Push to main builds ghcr.io/<owner>/secondbrain-mcp, SSHs to Hetzner,
installs the nginx vhost into /opt/hetzner/deploy/nginx/conf.d/, syncs
observability drop-ins, and health-checks https://brain.lous.info/health.
GitHub Environment Hetzner: secret HETZNER_SSH_KEY, vars
HETZNER_HOST, HETZNER_USER (same as the other apps).
Local
cp .env.example .env # set VAULT_GITHUB_PAT + GitHub OAuth vars
docker compose -f docker-compose.dev.yml up -d --build
curl -s localhost:8770/health
Tools
Reads: search_vault, get_note, neighbors
Lenses: next_actions, renewals, annual_cost, open_unknowns,
stale_facts, check_graph
Writes: capture, answer_unknown
Every write is pull --rebase → edit → check_graph.py → commit → push, and
rolls back if the validator reports dangling links.
Known limits
answer_unknowndoes string surgery on frontmatter; fine for current vault shapes, not exotic YAML.renewalsneeds notes withrenewal_datepopulated.
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