RAG-MCP Pipeline Research
A learning repository exploring Retrieval-Augmented Generation (RAG) and Multi-Cloud Processing (MCP) server integration using free and open-source models.
dzikrisyairozi
README
RAG-MCP Pipeline Research
A comprehensive research project exploring Retrieval-Augmented Generation (RAG) and Multi-Cloud Processing (MCP) server integration using free and open-source models.
Project Overview
This repository serves as a structured learning and research path for understanding how to integrate Large Language Models (LLMs) with external services through MCP servers, with a focus on practical business applications such as accounting software integration (e.g., QuickBooks).
🌟 Key Features
- No paid API keys required - uses free Hugging Face models
- Run everything locally without external dependencies
- Comprehensive step-by-step documentation for beginners
- Practical examples with working code
Research Modules
Module 0: Prerequisites
Establish a solid foundation before diving into specific areas:
- Programming & Tools: Python, Git/GitHub, Docker
- Basic Concepts: Machine learning, RESTful APIs, cloud services
- AI & LLM Foundations: Understanding transformers, RAG, and prompt engineering
- Development environment setup with free models
Module 1: AI Modeling & LLM Integration
- Understanding different LLM architectures and capabilities
- Integration methods with various LLM providers (Hugging Face, open-source models)
- Fine-tuning strategies for domain-specific tasks
- Evaluation metrics and performance optimization
Module 2: Hosting & Deployment Strategies for AI
- Scalable infrastructure for AI applications
- Cost optimization techniques
- Model serving options (serverless, container-based, dedicated instances)
- Monitoring and observability for LLM applications
Module 3: Deep Dive into MCP Servers
- Architecture and components of MCP servers
- Building secure API gateways for external service integration
- Authentication and authorization patterns
- Command execution protocols and standardization
Module 4: API Integration & Command Execution
- Integration with business software APIs (QuickBooks, etc.)
- Data transformation and normalization
- Error handling and resilience strategies
- Testing and validation methodologies
Module 5: RAG (Retrieval Augmented Generation) & Alternative Strategies
- Vector database selection and optimization
- Document processing pipelines
- Hybrid retrieval approaches
- Alternative augmentation strategies for LLMs
Project Goals
- Gain comprehensive understanding of RAG and MCP server concepts
- Build prototype integrations with popular business software
- Develop a framework for AI-powered data entry and processing
- Create documentation and best practices for future implementations
Getting Started
-
Clone this repository to your local machine
git clone https://github.com/your-username/rag-mcp-pipeline-research.git cd rag-mcp-pipeline-research
-
Run the setup script to prepare your environment
# Navigate to the project directory python src/setup_environment.py
-
Activate the virtual environment
# On Windows venv\Scripts\activate # On macOS/Linux source venv/bin/activate
-
Start with Module 0: Prerequisites
-
Progress through each module sequentially
-
Complete the practical exercises in each section
Why Free Models?
This project intentionally uses free, open-source models from Hugging Face instead of commercial APIs like OpenAI for several reasons:
- Accessibility - Anyone can follow along without financial barriers
- Educational Value - Better understanding of how models work internally
- Privacy - All processing happens locally on your machine
- Flexibility - Easier to customize and fine-tune models for specific needs
- Future-Proofing - Skills transfer to any model, not tied to specific providers
For production applications, you may choose to use commercial APIs for better performance, but the concepts learned here apply universally.
License
MIT
Recommended Servers
Crypto Price & Market Analysis MCP Server
A Model Context Protocol (MCP) server that provides comprehensive cryptocurrency analysis using the CoinCap API. This server offers real-time price data, market analysis, and historical trends through an easy-to-use interface.
MCP PubMed Search
Server to search PubMed (PubMed is a free, online database that allows users to search for biomedical and life sciences literature). I have created on a day MCP came out but was on vacation, I saw someone post similar server in your DB, but figured to post mine.
dbt Semantic Layer MCP Server
A server that enables querying the dbt Semantic Layer through natural language conversations with Claude Desktop and other AI assistants, allowing users to discover metrics, create queries, analyze data, and visualize results.
mixpanel
Connect to your Mixpanel data. Query events, retention, and funnel data from Mixpanel analytics.

Sequential Thinking MCP Server
This server facilitates structured problem-solving by breaking down complex issues into sequential steps, supporting revisions, and enabling multiple solution paths through full MCP integration.

Nefino MCP Server
Provides large language models with access to news and information about renewable energy projects in Germany, allowing filtering by location, topic (solar, wind, hydrogen), and date range.
Vectorize
Vectorize MCP server for advanced retrieval, Private Deep Research, Anything-to-Markdown file extraction and text chunking.
Mathematica Documentation MCP server
A server that provides access to Mathematica documentation through FastMCP, enabling users to retrieve function documentation and list package symbols from Wolfram Mathematica.
kb-mcp-server
An MCP server aimed to be portable, local, easy and convenient to support semantic/graph based retrieval of txtai "all in one" embeddings database. Any txtai embeddings db in tar.gz form can be loaded
Research MCP Server
The server functions as an MCP server to interact with Notion for retrieving and creating survey data, integrating with the Claude Desktop Client for conducting and reviewing surveys.