PrimeKG to Neo4j
MCP Server for PrimeKG dataset
dmigo
README
PrimeKG to Neo4j
This project imports the Precision Medicine Knowledge Graph (PrimeKG) into a Neo4j database for data analysis and exploration.
Overview
PrimeKG is a comprehensive biomedical knowledge graph that integrates 20 high-quality biomedical resources to describe 17,080 diseases with over 4 million relationships across ten major biological scales.
This project:
- Downloads and processes PrimeKG data
- Imports the data into a Neo4j graph database
- Provides tools for querying and analyzing the data
Project Structure
primekg-mcp/
├── config/ # Configuration files
├── data/ # Data files (PrimeKG data will be stored here)
├── docs/ # Documentation
├── scripts/ # Utility scripts for data processing
├── src/ # Source code
│ ├── db/ # Database connection and queries
│ ├── etl/ # Data extraction, transformation, loading
│ └── utils/ # Utility functions
└── tests/ # Test files
Setup Instructions
(Setup instructions will be added as the project progresses)
Usage
(Usage instructions will be added as the project progresses)
License
(License information will be added)
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