MCP Servers

plant-public-mcp

An MCP server providing public plant bioinformatics APIs including UniProt, NCBI, InterProScan, PDB, AlphaFold, Ensembl Plants, and web-based resources like Sol Genomics and BAR, without local data. It supports gene lookups, protein summaries, structure retrieval, and functional annotations through natural language.

README

plant-public-mcp

植物生物信息学 公共接口 MCP：UniProt / NCBI / InterProScan / PDB / AlphaFold，以及 Ensembl Plants、Sol Genomics（茄科公共入口）、拟南芥 BAR / ATTED / STRING。

本包不包含任何本地基因组、本地 RNA-seq 或物种专库数据。数据全部走公开 API；无开放 API 的工具只返回提交步骤与参数建议，不编造结果。

覆盖资源

模块	数据源	访问
`uniprot`	UniProt	REST
`ncbi`	NCBI E-utilities	REST（可选 `NCBI_API_KEY`）
`interpro`	EBI InterProScan	REST 异步作业
`structure`	RCSB PDB + AlphaFold DB	REST
`plant`	Ensembl Plants	REST
`plant`	Sol Genomics、SignalP、TMHMM、PlantCARE、PlantTFDB、TAIR、scPlantDB	网页调度指引
`bar` / `atted` / `stringdb`	拟南芥 BAR eFP、ATTED-II、STRING	REST

茄科：用 ensembl_plants_gene(species="solanum_lycopersicum", ...) 或 plant_resource_guide("solgenomics")。本包不收录辣椒专库。

运行

cd plant-public-mcp
uv sync
uv run server.py

Cursor / Claude / MiniMax 注册：

{
  "mcpServers": {
    "plant-public": {
      "command": "uv",
      "args": ["run", "--directory", "/absolute/path/to/plant-public-mcp", "server.py"]
    }
  }
}

CLI：uv run plant-cli uniprot summary P0DP23

许可

MIT。上游数据库各有自己的使用条款，调用时请遵守速率限制与署名要求。

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