Obsidian MCP Server

This Obsidian plugin runs a local MCP (Model Context Protocol) server, allowing external applications (like AI assistants, scripts, or other tools) to interact with your Obsidian vault through a standardized interface.

This is a work-in-progress plugin, and while it is functional, it may have bugs or incomplete features. Please report any issues you encounter. I don't know TypeScript that well so there might be security and reliability issues. You can help by opening issues or pull requests on GitHub. I will try to respond to them as soon as possible.

Features

• Local MCP Server: Runs an SSE-based MCP server on a configurable port.
• Vault Interaction Tools: Exposes the following tools via the MCP server:
  • simple_vector_search: Performs semantic search across indexed notes in your vault using vector embeddings. Requires vault indexing to be completed.
  • count_entries: Reports the number of indexed document chunks in the vector store.
  • list_files: Lists files and folders within a specified directory in your vault.
  • read_file: Reads the content of a specific file (optionally with line numbers).
  • write_file: Creates a new file within the vault.
  • edit_file: Edits a specific range of lines within an existing file.
• Vault Indexing for Semantic Search:
  • Indexes the content of your Markdown notes into an Orama vector database.
  • Uses a configurable OpenAI-compatible embedding model (e.g., OpenAI, local Ollama models via compatible endpoints) to generate embeddings.
  • Allows configuration of text chunking parameters (size, overlap, separators).
  • Supports excluding specific files or patterns from indexing using .gitignore syntax.
• Obsidian Integration:
  • Commands: Provides commands in the Obsidian command palette to:
    • Start/Stop the MCP Server.
    • Re-index the entire vault (can be time-consuming and potentially costly depending on the embedding provider).
    • Manually save the vector database index.
  • Settings Tab: Offers a dedicated settings panel to configure:
    • Server port and auto-start behavior.
    • Embedding provider details (API endpoint, model name, API key).
    • File exclusion patterns for indexing.
    • Chunking parameters.
    • Connection verification for the embedding provider.
  • Ribbon Icon: Adds a status icon to the Obsidian ribbon indicating whether the MCP server is running or stopped.

Configuration

Access the plugin settings within Obsidian to configure:

1. Server Settings: Port number and whether the server should start automatically with Obsidian.
2. Embedding Model: Provide the URL, model name, and API key for your chosen OpenAI-compatible embedding provider. Verify the connection using the provided button.
3. Vector Store:
   • Define file patterns (like .gitignore) to exclude specific files or folders from indexing. You can copy patterns directly from your vault's .gitignore file.
   • Adjust chunking parameters (size, overlap, separators) if needed, though default values are generally suitable.

Usage

1. Configure: Set up the plugin via the Obsidian settings panel, especially the Embedding Model details.
2. Index Vault: Run the "Re-index Vault (MCP Server)" command from the Obsidian command palette. This is necessary for the simple_vector_search tool to function. Wait for the indexing process to complete (a notification will appear).
3. Start Server: Ensure the MCP server is running. Either enable "Auto Start MCP" in settings or use the "Start MCP Server" command.
4. Connect External Tool: Connect your MCP client (e.g., an AI assistant configured to use MCP) to the server endpoint displayed in the settings (e.g., http://localhost:8080/sse).
5. Utilize Tools: Use the available MCP tools (simple_vector_search, list_files, read_file, etc.) from your connected client to interact with your Obsidian vault.
6. In your favorite MCP capable client, configure MCP to SSE mode and set the endpoint to http://localhost:8080/sse (or the port you configured). Then you can use the tools exposed by this plugin.
7. Stop Server: Use the "Stop MCP Server" command to stop the server when not in use.

Development

This project uses TypeScript. Ensure you have Node.js and npm installed.

1. Clone the repository.
2. Run npm install to install dependencies.
3. Run npm run dev to compile the plugin and watch for changes.
4. Copy the main.js, manifest.json, and styles.css files into your Obsidian vault's .obsidian/plugins/mcp-server/ directory.
5. Reload Obsidian and enable the plugin.

Known Issue

If your vault contains a lot of notes, the indexing process would fail as the database cannot be saved to a single local file. This will happen if the orama.msp file is larger than 512MB. There is no workaround for this yet. You can try to reduce the number of notes in your vault or use a different vector database that supports sharding (like Pinecone).