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cpersona

MCP Memory Server

Give Claude persistent memory across sessions. Single SQLite file. 16 tools. Zero LLM dependency.

Quick Start · Features · Architecture · All Tools · Zenn Book (JP)

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Standalone repository — This is the standalone version for use with Claude Desktop, Claude Code, and any MCP client. If you are a ClotoCore user, use the version in cloto-mcp-servers instead.

The Problem

Claude forgets everything between sessions. Every conversation starts from zero — no context about your project, your preferences, or what you discussed yesterday.

cpersona fixes this. It's an MCP server that stores memories in a local SQLite file and retrieves them through hybrid search. Claude remembers you.

Quick Start

Prerequisites: Python 3.10+, Git

git clone https://github.com/Cloto-dev/cpersona.git
cd cpersona
python -m venv .venv

# Windows
.venv\Scripts\activate
# macOS / Linux
# source .venv/bin/activate

pip install .

Claude Desktop — add to claude_desktop_config.json:

{
  "mcpServers": {
    "embedding": {
      "command": "/path/to/.venv/bin/python",
      "args": ["/path/to/servers/embedding/server.py"],
      "env": {
        "EMBEDDING_PROVIDER": "onnx_jina_v5_nano",
        "EMBEDDING_HTTP_PORT": "8401"
      }
    },
    "cpersona": {
      "command": "/path/to/.venv/bin/python",
      "args": ["/path/to/cpersona/server.py"],
      "env": {
        "CPERSONA_DB_PATH": "/home/you/.claude/cpersona.db",
        "CPERSONA_EMBEDDING_MODE": "http",
        "CPERSONA_EMBEDDING_URL": "http://127.0.0.1:8401/embed"
      }
    }
  }
}

Windows: use .venv/Scripts/python.exe and C:/Users/you/.claude/cpersona.db

Claude Code:

claude mcp add-json embedding '{"type":"stdio","command":"/path/to/.venv/bin/python","args":["/path/to/servers/embedding/server.py"],"env":{"EMBEDDING_PROVIDER":"onnx_jina_v5_nano","EMBEDDING_HTTP_PORT":"8401"}}' -s user

claude mcp add-json cpersona '{"type":"stdio","command":"/path/to/.venv/bin/python","args":["/path/to/cpersona/server.py"],"env":{"CPERSONA_DB_PATH":"/home/you/.claude/cpersona.db","CPERSONA_EMBEDDING_MODE":"http","CPERSONA_EMBEDDING_URL":"http://127.0.0.1:8401/embed"}}' -s user

That's it. Claude now has persistent memory. Ask it to store something and recall it in a later session.

Features

Hybrid Search — Three independent retrieval strategies run in parallel and merge results via Reciprocal Rank Fusion (RRF):

Layer	Method	Strength
Vector	Cosine similarity (jina-v5-nano, 768d)	Semantic meaning
FTS5	SQLite full-text search with trigram tokenizer	Exact terms, names, IDs
Keyword	Fallback pattern matching	Edge cases, partial matches

Memory Types:

• Declarative memory — Individual facts, decisions, instructions stored via store
• Episodic memory — Conversation summaries archived via archive_episode
• Profile memory — Accumulated user/project attributes via update_profile

Confidence Scoring — Each recalled memory gets a confidence score combining:

• Cosine similarity (semantic relevance)
• Dynamic time decay (adapts to corpus time range — a 1-year-old corpus and a 1-day-old corpus use different decay curves)
• Recall boost (frequently useful memories surface more easily, with natural fade-out)
• Completion factor (resolved topics decay faster)

Zero LLM Dependency — cpersona is a pure data server. It never calls an LLM internally. All summarization and extraction is performed by the calling agent. This means zero API costs from cpersona itself, deterministic behavior, and no hidden latency.

Additional capabilities:

• Agent namespace isolation — multiple agents share one DB without interference
• Background task queue — DB-persisted, crash-recoverable async processing
• JSONL export/import — full memory portability between environments
• Agent-to-agent memory merge — atomic copy/move with deduplication
• Auto-calibration — statistical threshold tuning via null distribution z-score (no labels needed)
• Health check — 15 automated detections with auto-repair (contamination, duplicates, FTS desync, invalid data, stale tasks)
• stdio + Streamable HTTP transport
• Single-file SQLite — no external database required

Architecture

                         ┌─────────────────────────────────────┐
                         │            MCP Host                 │
                         │   (Claude Desktop / Claude Code)    │
                         └──────────────┬──────────────────────┘
                                        │ MCP (JSON-RPC)
                         ┌──────────────▼──────────────────────┐
                         │           cpersona                  │
                         │         (server.py)                 │
                         │                                     │
                         │  ┌─────────┐  ┌─────────┐          │
                         │  │  store   │  │ recall  │  ...     │
                         │  └────┬────┘  └────┬────┘          │
                         │       │             │               │
                         │  ┌────▼─────────────▼────────────┐  │
                         │  │         SQLite DB              │  │
                         │  │                                │  │
                         │  │  memories    (content + embed) │  │
                         │  │  episodes    (summaries)       │  │
                         │  │  profiles    (attributes)      │  │
                         │  │  memories_fts (FTS5 index)     │  │
                         │  │  episodes_fts (FTS5 index)     │  │
                         │  │  task_queue   (async jobs)     │  │
                         │  └────────────────────────────────┘  │
                         │                                      │
                         └──────────────┬───────────────────────┘
                                        │ HTTP
                         ┌──────────────▼──────────────────────┐
                         │       Embedding Server              │
                         │  (jina-v5-nano ONNX, 768d)          │
                         └─────────────────────────────────────┘

Recall flow (RRF mode):

Query → ┌── Vector search (cosine similarity)  ──┐
        ├── FTS5 search (episodes + memories)    ──┼── RRF merge → Confidence scoring → Top-K
        └── Keyword fallback                     ──┘

Benchmarks

Tested on LMEB (Long-term Memory Evaluation Benchmark, results) — 22 evaluation tasks measuring memory retrieval quality:

Embedding Model	Params	Dimensions	Mean NDCG@10
MiniLM-L6-v2	22M	384	36.88
e5-small	33M	384	46.36
jina-v5-nano	33M	768	54.14

jina-v5-nano achieves +47% improvement over the MiniLM baseline.

All Tools

Tool	Description
store	Store a message in agent memory
recall	Recall relevant memories (vector + FTS5 + keyword, RRF merge)
get_profile	Get current agent profile
update_profile	Save pre-computed agent profile
archive_episode	Archive conversation episode with summary and keywords
list_memories	List recent memories
list_episodes	List archived episodes
delete_memory	Delete a single memory (ownership enforced)
delete_episode	Delete a single episode (ownership enforced)
delete_agent_data	Delete all data for an agent
calibrate_threshold	Auto-calibrate vector search threshold via z-score
export_memories	Export to JSONL (memories, episodes, profiles)
import_memories	Import from JSONL (idempotent via msg_id dedup)
merge_memories	Merge one agent's data into another (atomic, with dedup)
get_queue_status	Background task queue status
check_health	15-point database health check with auto-repair

Configuration

All settings via environment variables with sensible defaults:

Variable	Default	Description
CPERSONA_DB_PATH	./cpersona.db	SQLite database path
CPERSONA_EMBEDDING_MODE	http	Embedding mode (http or disabled)
CPERSONA_EMBEDDING_URL	http://127.0.0.1:8401/embed	Embedding server URL
CPERSONA_VECTOR_SEARCH_MODE	remote	Vector search mode
CPERSONA_SEARCH_MODE	rrf	Search strategy (rrf or cascade)
CPERSONA_RRF_K	60	RRF smoothing parameter
CPERSONA_CONFIDENCE_ENABLED	false	Include confidence metadata in results
CPERSONA_AUTO_CALIBRATE	false	Auto-calibrate on startup
CPERSONA_TASK_QUEUE_ENABLED	false	Enable background task queue

Stats

• ~3,000 LOC Python (single file, server.py)
• 117 tests across 12 test modules
• Schema v7 (auto-migrating)
• MIT License

Works With

cpersona is an MCP server — it works with any MCP-compatible host:

• Claude Desktop
• Claude Code
• ClotoCore (AI agent platform, where cpersona originated)
• Any custom MCP client

Part of ClotoCore

cpersona is the memory layer of ClotoCore, an open-source AI agent platform written in Rust. While cpersona is fully standalone (MIT license), it was designed to give AI agents persistent, searchable memory within the ClotoCore ecosystem.

Learn More

• Zenn Book (Japanese) — Full design walkthrough and setup guide
• Memory System Design — Technical specification
• ClotoCore — The AI agent platform

License

MIT — free to use from any MCP host without restriction. </div>