chunktuner

Auto chunking tuner and MCP server for RAG pipelines.

Give it your documents. It tries multiple chunking strategies, measures which one lets an AI answer questions most accurately, and tells you the winner.

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What it does

When building a RAG pipeline, how you split documents into chunks directly impacts retrieval quality. chunktuner automates the process of finding the optimal chunking strategy for your specific corpus, embedding model, and use case.

It benchmarks strategies like fixed-token windows, recursive character splitting, semantic splitting, PDF structural chunking, and AST-based code chunking — then scores each one against real retrieval metrics (token recall, MRR, NDCG) and optional generation metrics (RAGAS faithfulness, answer relevancy).

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Interfaces

• Python library — programmatic integration into your pipeline
• CLI (chunk-tune) — human-driven tuning from the terminal
• MCP server — use directly from Claude Desktop or any MCP host

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Quickstart

# Install
uv tool install chunktuner

# Initialize workspace
chunk-tune init --provider openai

# See cost estimate before running anything
chunk-tune estimate ./my_docs --use-case rag_qa

# Get a recommendation
chunk-tune recommend ./my_docs --use-case rag_qa

Python API:

from pathlib import Path
from chunktuner import FileIngestor, LiteLLMEmbeddingFunction, AutoTuner
from chunktuner import default_registry, Evaluator, ScoreCalculator

docs = FileIngestor().ingest_dir(Path("./my_docs"))
embedding_fn = LiteLLMEmbeddingFunction("text-embedding-3-small")
tuner = AutoTuner(
    strategies=default_registry,
    evaluator=Evaluator(embedding_fn),
    scorer=ScoreCalculator(use_case="rag_qa"),
)
result = tuner.recommend(docs, use_case="rag_qa")
print(result.best.config)

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Supported strategies

Strategy	Best for
fixed_tokens	Baseline; uniform token windows
recursive_character	General prose and documentation
semantic	Theme-heavy articles
markdown_semantic	Structured Markdown docs
pdf_structural	PDFs with layout regions and tables
structural_semantic	PDF/DOCX with mixed layout and text
late_chunking	Long docs with dense cross-references
agentic	High-value narrative documents
code_ast	Code repos (Python, JavaScript)
code_window	Code baseline (sliding window)

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MCP server (Claude Desktop)

Python FastMCP (chunk-tune-mcp, stdio). No Node.js build. See docs/mcp_setup.md.

Add to your .mcp.json:

{
  "mcpServers": {
    "chunktuner": {
      "command": "uvx",
      "args": ["--from", "chunktuner[mcp]", "chunk-tune-mcp"],
      "env": {
        "CHUNK_TUNER_BASE_DIR": "/path/to/your/corpus"
      }
    }
  }
}

Tools available: list_strategies, preview_chunks, evaluate_chunking, recommend_config.

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CLI reference

chunk-tune init       Bootstrap workspace config
chunk-tune analyze    Quick structural scan (no API cost)
chunk-tune estimate   Dry-run cost/token estimate
chunk-tune evaluate   Full evaluation across strategies
chunk-tune recommend  Evaluation + best config recommendation
chunk-tune compare    Side-by-side comparison of specific strategies
chunk-tune preview    Inspect how a strategy splits a document
chunk-tune cache      Manage embedding and chunk cache

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Installation options

uv add chunktuner                    # library
uv tool install chunktuner           # global CLI
uvx --from chunktuner chunk-tune …   # ephemeral CLI (no install)

# With optional extras
uv add "chunktuner[docling]"         # PDF/DOCX support
uv add "chunktuner[ragas]"           # generation metrics
uv add "chunktuner[semantic]"        # semantic chunking
uv add "chunktuner[code]"            # AST code chunking
uv add "chunktuner[all]"             # everything

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Contributing

See CONTRIBUTING.md.

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👨🏻‍💻 Author

Shantanu Deshmukh

Full stack developer with experience in building E2E AI applications.

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